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Table 3 Oligonucleotide primer sequences, accession numbers, annealing temperatures and PCR product sizes of the investigated genes via real-time PCR

From: Single nucleotide polymorphisms, gene expression and evaluation of immunological, antioxidant, and pathological parameters associated with bacterial pneumonia in Barki sheep

Gene

Primer

Product length (bp)

Annealing Temperature (°C)

Accession number

Source

IL-1α

F5′- CCATACATGACGGCTGCTACA − 3

R5′- TGTCTCAGGCATCTCCTTATGC − 3′

180

62

NM_001009808.1

Current study

IL-1β

F5′- ACAGATGAAGAGCTGCACCC − 3′

R5′- AGACATGTTCGTAGGCACGG − 3′

161

58

NM_001009465.2

Current study

IL-6

F5- TGCAGTCCTCAAACGAGTGG − 3′

R5′- CCGCAGCTACTTCATCCGAA − 3′

110

62

NM_001009392.1

Current study

TNF-α

F5′- CTTTGGGATCATCGCCCTGT − 3′

R5′- CAGCCCTGAGCCCCTAATTC − 3′

129

60

NM_001024860.1

Current study

IL-10

F5′- CTCGACTAGACTCCCCGACA − 3′

R5′- ACTCTAGGGGAGAGGCACAG − 3′

102

58

NM_001009327.1

Current study

LFA-1

F5′- TTGGGTACCGTGTTCTGCAA − 3′

R5′- TCACATGTTCGAGACAGCCC − 3′

223

58

NM_001035124.1

Current study

CR2

F5′- TACCCTAGAAGGCAGTCCCC-3′

R5′- AAGGTGACAACACCCAAGCA G − 3′

153

60

NM_001009724.1

Current study

IL-17

F5′- TTATCACAAGCGCTCCACCT − 3′

R5′- GTGATGGTCCACCTTCCCTT − 3′

133

58

XM_004018887.5

Current study

IL-13

F5′- TCCAGCACTAAAGCAGTGGG − 3′

R5′- TGCTGGCTGTCAGACAAGAG − 3′

141

62

NM_001082594.1

Current study

DEFB123

F5′- ACTGTGCTGTGTGAAGTCCA − 3′

R5′- GGGGTTAGACTCAGGGTAGC − 3′

112

58

XM_027976443.1

Current study

SCART1

F5′- CCACTGGGACTTGGCAGAC − 3′

R5′- GCTCTGTCCCCACGCA − 3′

140

58

EF215856.1

Current study

ICAM1

F5′- CACCATATACTGGTTCCCGGAG − 3

R5′- CATGGTCCTCTCTTCTCGGC − 3′

224

62

NM_001009731.1

Current study

SOD1

F5- TGATCATGGGTTCCACGTCC − 3′

R5′- CACATTGCCCAGGTCTCCAA − 3′

139

60

NM_001145185.2

Current study

CAT

F5- TTCGCTTCTCCACTGTTGCT − 3′

R5′- CCGGATCCTTCAGGTGTGTC − 3′

207

58

XM_004016396.5

Current study

GPX1

F5- AACGTAGCATCGCTCTGAGG − 3

R5- CAAACTGGTTGCACGGGAAG − 3

115

62

XM_004018462.5

Current study

NOS

F5′- CTCCCAAGGTGACTTCCCAGA − 3′

R5′- ACCAAAGGGCTGACTGTAGG − 3′

142

58

NM_001129901.1

Current study

HMOX1

F5′- CAAGCGCTATGTTCAGCGAC − 3′

R5′- GCTTGAACTTGGTGGCACTG − 3′

206

60

MK630326.1

Current study

NQO1

F5′- GGCAGTGGCTCCATGTACTC − 3′

R5′- TAGATGGCCACCTCACATGC − 3′

116

62

XM_012190046.4

Current study

ß. actin

F5′- GCAAAGACCTCTACGCCAAC-3′

R5′- TGATCTTCATCGTGCTGGGT − 3′

114

60

NM_001009784.3

Current study

  1. -IL-1α Interleukin 1 alpha, IL-1β Interleukin 1 beta, IL-6 Interleukin 6, TNF- α Tumor necrosis factor- alpha, IL10 Interleukin 10, LFA-1 Lymphocyte function-associated antigen 1, CR2 Complement C3d receptor 2, IL-17 Interleukin 17, IL-13 Interleukin 13, DEFB123 β-defensin, SCART1 Scavenger Receptor Family Member Expressed On T Cells 1, ICAM1 intercellular adhesion molecule 1, SOD1 Superoxide dismutase 1, CAT Catalase, GPX1 Glutathione peroxidase 1, NOS Nitric oxide synthetase, HMOX1 Heme Oxygenase 1, NQO1 NAD(P)H Quinone Dehydrogenase 1